Best target: Krieg Gorgon. A no void shield War Engine with capacity of 10 troops. In one of my first games I had my supreme commander in the one that got hit, that was an expensive lesson

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Then your only problem is convincing the opponent he wants to keep his troops in the transports

That's a whole seperate discussion that is worth having, Frogbear.
When do you keep your troops in transports? Only when you thnk you need the extra assault range in their next turn, or are there other justifications?
Do you keep them in transports against an opponent with massed AP weapons and low AT, or against a large volume of blast template artillery?